4FBU

Dpo4 polymerase pre-insertion binary complex with the N-(deoxyguanosin-8-yl)-1-aminopyrene lesion

Structural Biology Knowledgebase: 4FBU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.218

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4FBU

Classification: TRANSFERASE / DNA

Total Structure Weight: 95175.55


Macromolecule Entities
Molecule Chains Length Organism Details
DNA polymerase IV A, B 341 Sulfolobus solfataricus EC#: 2.7.7.7 IUBMB
Gene Name(s): dbh dpo4 SSO2448
Macromolecule Entities
Molecule Chains Length Organism Details
DNA primer D, P 13 synthetic
DNA template C, T 14 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
DG8
Query on DG8
C, T DNA LINKING C26 H23 N6 O7 P DG

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.218
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 52.77 α = 90.00
b = 181.46 β = 109.49
c = 52.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-05-23
  • Released Date: 2013-06-12
  • Deposition author(s): Kirouac, K., Basu, A., Ling, H.

Revision History

  • 2013-11-13
    Type: Citation | Details: Citation update
  • 2013-09-11
    Type: Citation | Details: Citation update