Polyomavirus T-ag binds symmetrical repeats at the viral origin in an asymmetrical manner
DOI:10.2210/pdb4fb3/pdb   NDB ID: NA1815
Primary Citation
  •   Molecular Description Hide
    Classification: DNA Binding Protein/dna
    Structure Weight: 66857.14
    Molecule: ORI DNA oligonucleotide-Crick strand
    Polymer: 1 Type: dna Length: 26
    Chains: C
    Molecule: ORI DNA oligonucleotide-Watson strand
    Polymer: 2 Type: dna Length: 26
    Chains: W
    Molecule: Large T antigen
    Polymer: 3 Type: protein Length: 146
    Chains: A, B, E
    EC#: 3.6.4   
    Fragment: origin binding domain, UNP residues 290-420
    Organism: Murine polyomavirus
    UniProtKB: Search PDB | P03074   Protein Feature View
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot

  •   Related Citations in PDB Entry (REMARK 1) Hide
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Mouse polyomavirus   Taxonomy   Common Name: Mpyv Expression System: Escherichia coli  
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  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA1815
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Bohm, A.,  Harrison, C.J.,  Schaffhausen, B.S.,  Jiang, T.

    Deposition:   2012-05-22
    Release:   2013-10-23
    Last Modified (REVDAT):   2013-12-04
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  •   Experimental Details Hide
    Exp. Data:
      Structure Factors
    Resolution[Å]:   3.79
    R-Value: 0.223 (obs.)
    R-Free: 0.244
    Space Group: C 2 2 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 165.15 α = 90.00 
    b = 167.92 β = 90.00 
    c = 77.73 γ = 90.00