Bacillus DNA Polymerase I Large Fragment complex 7
DOI:10.2210/pdb4f8r/pdb   NDB ID: NA1787
4F8R
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 148797.17
    Molecule: DNA polymerase
    Polymer: 1 Type: protein Length: 592
    Chains: A, D
    EC#: 2.7.7.7   
    Fragment: unp residues 287-898
    Mutation: D598A, F710Y
    Organism: Geobacillus kaustophilus HTA426
    Gene Names: polA GK2730
    UniProtKB: Protein Feature View | Search PDB | Q5KWC1  
    Molecule: DNA (5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3')
    Polymer: 2 Type: dna Length: 9
    Chains: B, E
    Details: DNA Primer Strand
    Organism: synthetic construct
    Molecule: DNA (5'-D(*CP*AP*TP*TP*CP*GP*AP*GP*TP*CP*AP*GP*G)-3')
    Polymer: 3 Type: dna Length: 13
    Chains: C, F
    Details: DNA Template Strand
    Organism: synthetic construct
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Geobacillus kaustophilus   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4EZ6    
    4EZ9    
    4F2R    
    4F2S    
    4F3O    
    4F4K    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    SO4
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    SO4 O4 S
    SULFATE ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    DDG
    Search 
    DDG C10 H14 N5 O6 P DG dnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA1787
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Wang, W.,  Beese, L.S.

    Deposition:   2012-05-17
    Release:   2013-08-07
    Last Modified (REVDAT):   2014-05-07
     
  •   Revision History    Hide
    No revisions since initial release
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.64
    R-Value: 0.182 (obs.)
    R-Free: 0.203
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 93.67 α = 90.00 
    b = 109.37 β = 90.00 
    c = 150.39 γ = 90.00