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Crystal structure of bovine CD1d with bound C16:0-alpha-galactosyl ceramide
4F7E
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Immune System
    Structure Weight: 45573.94
    Molecule: CD1D antigen, d polypeptide
    Polymer: 1 Type: protein Length: 283
    Chains: A
    Fragment: UNP residues 129-405
    Organism: Bos taurus
    Gene Name: Gene View for CD1D
    UniProtKB: Protein Feature View | Search PDB | A1L565  
    Molecule: Beta-2-microglobulin
    Polymer: 2 Type: protein Length: 98
    Chains: B
    Fragment: UNP residues 21-118
    Organism: Bos taurus
    Gene Name: Gene View for B2M
    UniProtKB: Protein Feature View | Search PDB | P01888  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Bos taurus   Taxonomy   Common Name: Bovine Expression System: Spodoptera frugiperda  
    Polymer: 2
    Scientific Name: Bos taurus   Taxonomy   Common Name: Bovine Expression System: Spodoptera frugiperda  
    Polymer: 4
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1Z5L  Structure of a highly potent short-chain galactosyl ceramide agonist bound to CD1d 
    1ZT4  The crystal structure of human CD1d with and without alpha-Galactosylceramide 
    4F7C   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    0SH
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    0SH C40 H79 N O9
    N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)- 3,4-dihydroxyoctadecan-2-yl]hexadecanamide
    0SH:4F7E
    NAG
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    NAG C8 H15 N O6
    N-ACETYL-D-GLUCOSAMINE
    SO4
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    SO4 O4 S
    SULFATE ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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