4F4X

Y-family DNA polymerase chimera Dbh-Dpo4-Dpo4 #2

Structural Biology Knowledgebase: 4F4X SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.218

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4F4X

Classification: TRANSFERASE / DNA

Total Structure Weight: 51831.29


Macromolecule Entities
Molecule Chains Length Organism Details
DNA polymerase IV A 361 Sulfolobus acidocaldarius Sulfolobus solfataricus EC#: 2.7.7.7 IUBMB
Gene Name(s): dbh Saci_0554 dpo4 SSO2448
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*GP*CP*AP*CP*TP*GP*AP*TP*CP*GP*GP*GP*C)-3') P 14 synthetic Primer DNA
DNA (5'-D(*TP*TP*AP*CP*GP*CP*CP*CP*TP*GP*AP*TP*CP*AP*GP*TP*GP*CP*C)-3') T 19 synthetic Template DNA

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DCP
Query on DCP

A 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
C9 H16 N3 O13 P3
RGWHQCVHVJXOKC-SHYZEUOFSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, P CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.218
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 101.12 α = 90.00
b = 102.31 β = 90.00
c = 52.88 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-05-11
  • Released Date: 2013-01-02
  • Deposition author(s): Pata, J.D., Wilson, R.C.

Revision History

  • 2013-02-13
    Type: Citation | Details: Citation update