4F3T

Human Argonaute-2 - miR-20a complex

Structural Biology Knowledgebase: 4F3T SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.207

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4F3T

Classification: Hydrolase / RNA

Total Structure Weight: 104116.20


Macromolecule Entities
Molecule Chains Length Organism Details
Protein argonaute-2 A 861 Homo sapiens EC#: 3.1.26.n2 IUBMB
Gene Name(s): AGO2 Gene View EIF2C2
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(P*UP*AP*AP*AP*GP*UP*GP*CP*UP*UP*AP*UP*AP*GP*UP*G*CP*AP*GP*G)-3') R 20 Homo sapiens miR-20a

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IPH
Query on IPH

A PHENOL
C6 H6 O
ISWSIDIOOBJBQZ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.207
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 63.43 α = 90.00
b = 107.65 β = 106.69
c = 68.72 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-05-09
  • Released Date: 2012-05-30
  • Deposition author(s): Elkayam, E., Kuhn, C.-D., Tocilj, A., Joshua-Tor, L.

Revision History

  • 2012-07-25
    Type: Citation | Details: Citation update