4EMN

Crystal structure of RpfB catalytic domain in complex with benzamidine

Structural Biology Knowledgebase: 4EMN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.17 Å
  • R-Value Free: 0.188
  • R-Value Work: 0.127

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4EMN

Classification: hydrolase

Total Structure Weight: 35278.96

Macromolecule Entities
Molecule Chains Length Organism Details
Probable resuscitation-promoting factor rpfB A, B, C, D 81 Mycobacterium tuberculosis EC#: 3 IUBMB
Fragment: catalytic domain
Gene Name(s): rpfB Rv1009 MTC1237.26

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BEN
Query on BEN

A, B, C BENZAMIDINE
C7 H8 N2
PXXJHWLDUBFPOL-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.17 Å
  • R-Value Free: 0.188
  • R-Value Work: 0.127
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 42.54 α = 90.00
b = 50.73 β = 104.09
c = 66.42 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-04-12
  • Released Date: 2013-02-27
  • Deposition author(s): Ruggiero, A., Marchant, J., Squeglia, F., Makarov, V., De Simone, A., Berisio, R.

Revision History

No revisions since initial release