4E06

Anophelin from the malaria vector inhibits thrombin through a novel reverse-binding mechanism

Structural Biology Knowledgebase: 4E06 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.177

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4E06

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 40663.93

Macromolecule Entities
Molecule Chains Length Organism Details
Thrombin L 36 Homo sapiens EC#: 3.4.21.5 IUBMB
Fragment: light chain (UNP residues 328-363)
Gene Name(s): F2 Gene View
Thrombin H 259 Homo sapiens EC#: 3.4.21.5 IUBMB
Fragment: heavy chain (UNP residues 364-622)
Gene Name(s): F2 Gene View
Salivary anti-thrombin peptide anophelin I 61 Anopheles albimanus Fragment: mature anophelin (UNP residues 23-83)

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NA
Query on NA

H SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
NAG
Query on NAG

H N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.177
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 209.66 α = 90.00
b = 209.66 β = 90.00
c = 127.41 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-02
  • Released Date: 2012-12-05
  • Deposition author(s): Figueiredo, A.C., de Sanctis, D., Gutierrez-Gallego, R., Cereija, T.B., Macedo-Ribeiro, S., Fuentes-Prior, P., Pereira, P.J.B.

Revision History

  • 2013-01-09
    Type: Citation | Details: Citation update
  • 2012-12-26
    Type: Citation | Details: Citation update