4DYY

Crystal Structure of the Cu-adduct of Human H-Ferritin variant MIC1

Structural Biology Knowledgebase: 4DYY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.218

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DYY

Classification: OXIDOREDUCTASE

Total Structure Weight: 20502.41

Macromolecule Entities
Molecule Chains Length Organism Details
Ferritin heavy chain A 172 Homo sapiens EC#: 1.16.3.1 IUBMB
Mutation: Y39E, L56H, R63H, E67H, N74E, K86Q, P88A, C90E, C102A, C130A
Gene Name(s): FTH1 Gene View FTH FTHL6 OK/SW-cl.84 PIG15

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
CU
Query on CU

A COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
TRS
Query on TRS

A 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.218
  • Space Group: F 4 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 179.59 α = 90.00
b = 179.59 β = 90.00
c = 179.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-29
  • Released Date: 2013-01-23
  • Deposition author(s): Tezcan, F.A., Huard, D.J.E.

Revision History

  • 2013-03-06
    Type: Citation | Details: Citation update
  • 2013-02-13
    Type: Citation | Details: Citation update