SeMet protelomerase tela covalently complexed with substrate DNA
DOI:10.2210/pdb4dwp/pdb   NDB ID: NA1840
4DWP
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA Binding Protein/dna
    Structure Weight: 64177.14
    Molecule: Protelomerase
    Polymer: 1 Type: protein Length: 462
    Chains: A
    Organism: Agrobacterium fabrum str. C58
    Gene Names: telA Atu2523
    UniProtKB: Protein Feature View | Search PDB | Q7CWV1  
    Molecule: DNA (5'-D(*TP*TP*AP*CP*AP*AP*TP*AP*AP*CP*AP*AP*TP*AP*T)-3')
    Polymer: 2 Type: dna Length: 15
    Chains: C
    Molecule: DNA (5'-D(*CP*AP*TP*GP*AP*TP*AP*TP*TP*GP*TP*TP*AP*TP*TP*GP*TP*AP*A)-3')
    Polymer: 3 Type: dna Length: 19
    Chains: D
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Agrobacterium tumefaciens   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4E0G    
    4E0J    
    4E0P    
    4E0Y    
    4E0Z    
    4E10    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    TMP
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    TMP C10 H15 N2 O8 P
    THYMIDINE-5'-PHOSPHATE
    TMP:4DWP
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    MSE
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    MSE C5 H11 N O2 Se MET lPeptideLinking
    PTR
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    PTR C9 H12 N O6 P TYR lPeptideLinking
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA1840
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Shi, K.,  Aihara, H.

    Deposition:   2012-02-26
    Release:   2013-02-13
     
  •   Revision History    Hide
    No revisions since initial release
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.35
    R-Value: 0.191 (obs.)
    R-Free: 0.227
    Space Group: C 1 2 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 117.85 α = 90.00 
    b = 119.77 β = 108.63 
    c = 65.98 γ = 90.00