4DVV

Crystal structure of clade A/E 93TH057 HIV-1 gp120 core in complex with AS-I-261

Structural Biology Knowledgebase: 4DVV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.181

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DVV

Classification: viral protein / transcription inhibitor

Total Structure Weight: 84384.19

Macromolecule Entities
Molecule Chains Length Organism Details
Envelope glycoprotein gp160 A, B 353 Human immunodeficiency virus 1 Fragment: unp residues 43-486
Mutation: H375S

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0M1
Query on 0M1

A, B N-{[(4S,5S)-5-(aminomethyl)-2,2-dimethyl- 1,3-dioxolan-4-yl]methyl}-N'-(4-chloro-3- fluorophenyl)ethanediamide
C15 H19 Cl F N3 O4
KUDYRECLZBUMDK-RYUDHWBXSA-N
Ligand Explorer
 
JSmol
EPE
Query on EPE

A, B 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES (Synonym)
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.181
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 64.78 α = 90.00
b = 68.08 β = 91.42
c = 94.35 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-23
  • Released Date: 2013-02-27
  • Deposition author(s): Kwon, Y.D., Kwong, P.D.

Revision History

  • 2014-03-19
    Type: Citation | Details: Citation update