4DVT

Crystal structure of clade A/E 93TH057 HIV-1 gp120 core in complex with AS-II-37

Structural Biology Knowledgebase: 4DVT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.196

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DVT

Classification: viral protein / transcription inhibitor

Total Structure Weight: 84388.23

Macromolecule Entities
Molecule Chains Length Organism Details
Envelope glycoprotein gp160 A, B 353 Human immunodeficiency virus 1 Fragment: unp residues 43-122, 201-303, 325-486
Mutation: H375S

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0LZ
Query on 0LZ

A, B N-(4-chloro-3-fluorophenyl)-N'-[(1S)-1,2,3,4- tetrahydroisoquinolin-1-ylmethyl]ethanediamide
C18 H17 Cl F N3 O2
REQBBGSBIRNOFT-MRXNPFEDSA-N
Ligand Explorer
 
JSmol
EPE
Query on EPE

A, B 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES (Synonym)
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.196
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 64.81 α = 90.00
b = 68.40 β = 91.94
c = 93.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-23
  • Released Date: 2013-02-27
  • Deposition author(s): Kwon,Y.D., Kwong, P.D.

Revision History

  • 2014-03-19
    Type: Citation | Details: Citation update