4DTE

Crystal structure of zebrafish plasminogen activator inhibitor-1 (PAI-1)

Structural Biology Knowledgebase: 4DTE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.96 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.174

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DTE

Classification: HYDROLASE INHIBITOR

Total Structure Weight: 84515.11

Macromolecule Entities
Molecule Chains Length Organism Details
Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 A, B 374 Danio rerio Gene Name(s): serpine1

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.96 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.174
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 65.16 α = 90.00
b = 73.77 β = 102.73
c = 91.75 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-21
  • Released Date: 2013-03-27
  • Deposition author(s): Johansen, J.S.

Revision History

  • 2013-08-21
    Type: Entry title | Details: Entry title update
  • 2013-08-21
    Type: Citation | Details: Citation update
  • 2013-08-14
    Type: Citation | Details: Citation update
  • 2013-08-07
    Type: Citation | Details: Citation update
  • 2013-04-10
    Type: Other | Details: annotation mistake, the new coordinates with corrected chirality on NAG merged, NAG coordinates updated