Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA and Calcium
DOI:10.2210/pdb4dsl/pdb   NDB ID: NA1625
4DSL
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 75434.64
    Molecule: DNA polymerase
    Polymer: 1 Type: protein Length: 579
    Chains: A
    EC#: 2.7.7.7   
    Fragment: RESIDUES 298-876
    Mutation: A598D
    Organism: Geobacillus stearothermophilus
    UniProtKB: Protein Feature View | Search PDB | E1C9K5  
    Molecule: DNA (5'-D(*G*GP*CP*TP*AP*CP*AP*GP*GP*AP*CP*TP*C)-3')
    Polymer: 2 Type: dna Length: 13
    Chains: B
    Molecule: DNA (5'-D(*TP*CP*AP*CP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3')
    Polymer: 3 Type: dna Length: 17
    Chains: C
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Geobacillus stearothermophilus   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3ht3   Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus V713P mutant bound to G:dCTP 
    4DSI   Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus wuth duplex DNA, Se-dGTP and Calcium 
    4dsj   DNA polymerase I from Bacillus stearothermophilus wuth duplex DNA, dGTP and Calcium 
    4dsk   DNA polymerase I from Bacillus stearothermophilus wuth duplex DNA, PPi and Calcium 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    SO4
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    SO4 O4 S
    SULFATE ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA1625
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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