Crystal Structure of Human LysRS: P38/AIMP2 Complex I
4DPG
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ligase/apoptosis
    Structure Weight: 503817.33
    Molecule: Lysine--tRNA ligase
    Polymer: 1 Type: protein Length: 513
    Chains: A, B, C, D, E, F, G, H
    EC#: 6.1.1.6   
    Fragment: UNP residues 70-581
    Organism: Homo sapiens
    Gene Names: Gene View for KARS KIAA0070
    UniProtKB: Protein Feature View | Search PDB | Q15046  
    Molecule: Aminoacyl tRNA synthase complex-interacting multifunctional protein 2
    Polymer: 2 Type: protein Length: 54
    Chains: I, J, K, L
    Fragment: UNP residues 1-48
    Organism: Homo sapiens
    Gene Names: Gene View for AIMP2 JTV1 PRO0992
    UniProtKB: Protein Feature View | Search PDB | Q13155  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    4DPJ    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ALA
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    ALA C3 H7 N O2
    ALANINE
    APC
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    APC C11 H18 N5 O12 P3
    DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
    LYS
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    LYS C6 H15 N2 O2
    LYSINE
    MG
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    MG Mg
    MAGNESIUM ION
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Fang, P.,  Wang, J.,  Bennett, S.P.,  Guo, M.

    Deposition:   2012-02-13
    Release:   2013-02-13
     
  •   Revision History    Hide
    No revisions since initial release
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.84
    R-Value: 0.187 (obs.)
    R-Free: 0.223
    Space Group: P 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 79.20 α = 89.16 
    b = 122.01 β = 85.58 
    c = 149.20 γ = 89.71