4DP2

The 1.8 Angstrom crystal structure of oxidized (CuII) poplar plastocyanin B at pH 6.0

Structural Biology Knowledgebase: 4DP2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.141

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DP2

Classification: ELECTRON TRANSPORT

Total Structure Weight: 10785.48

Macromolecule Entities
Molecule Chains Length Organism Details
Plastocyanin B, chloroplastic X 99 Populus nigra Fragment: UNP residues 70-168
Gene Name(s): PETE

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

X SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

X GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CU
Query on CU

X COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

X ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.141
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 31.91 α = 90.00
b = 46.25 β = 90.00
c = 52.65 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-13
  • Released Date: 2013-02-13
  • Deposition author(s): Kachalova, G.S., Shosheva, A.H., Bourenkov, G.P., Donchev, A.A., Dimitrov, M.I., Bartunik, H.D.

Revision History

No revisions since initial release