4DMI

Crystal Structure of a Pentameric Capsid Protein Isolated from Metagenomic Phage Sequences (CASP)

Structural Biology Knowledgebase: 4DMI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.182
  • R-Value Work: 0.158

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DMI

Classification: VIRAL PROTEIN

Total Structure Weight: 93412.66

Macromolecule Entities
Molecule Chains Length Organism Details
Capsid Protein A, B, C, D, E 176 Unidentified

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A, C 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
NA
Query on NA

A, B, C, E SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.182
  • R-Value Work: 0.158
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 57.57 α = 90.00
b = 147.87 β = 112.05
c = 57.85 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-07
  • Released Date: 2012-08-29
  • Deposition author(s): Craig, T.K., Abendroth, J., Lorimer, D., Burgin Jr, A.B., Segall, A., Rohwer, F.

Revision History

No revisions since initial release