c-SRC kinase domain in complex with RM-1-176
4DGG
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase
    Structure Weight: 66341.67
    Molecule: Proto-oncogene tyrosine-protein kinase Src
    Polymer: 1 Type: protein Length: 286
    Chains: A, B
    EC#: 2.7.10.2   
    Fragment: kinase domain (UNP residues 251-533)
    Organism: Gallus gallus
    Gene Name: Gene View for SRC
    UniProtKB: Search PDB | P00523   Protein Feature View
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Gallus gallus   Taxonomy   Common Name: Bantam,chickens Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    3uqf    
    3uqg    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    I76
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    I76 C25 H22 Cl N5 O
    3-{6-[(3-chlorobenzyl)oxy]naphthalen-2-yl}- 1-(propan-2-yl)-1H-pyrazolo[3,4-d]pyrimidin- 4-amine
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    I76
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    I76
    N/Ain BindingDB
    N/Ain BindingMoad
    IC50: 800 nM - data from PDBbind  
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Merritt, E.A.,  Larson, E.T.

    Deposition:   2012-01-25
    Release:   2012-10-10
    Last Modified (REVDAT):   2013-01-02
     
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    2013-01-02
    Citation
    2012-11-21
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.65
    R-Value: 0.210 (obs.)
    R-Free: 0.252
    Space Group: P 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 42.17 α = 78.73 
    b = 63.48 β = 88.48 
    c = 74.00 γ = 89.93