4DAS

Crystal structure of Bullfrog M ferritin

Structural Biology Knowledgebase: 4DAS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.56 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.186

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DAS

Classification: OXIDOREDUCTASE

Total Structure Weight: 499007.86

Macromolecule Entities
Molecule Chains Length Organism Details
Ferritin, middle subunit A, B, C..., D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, XA, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X 176 Rana catesbeiana EC#: 1.16.3.1 IUBMB
Gene Name(s):

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PGE
Query on PGE

B, C, D, E, F, G, H, I, P, Q, R, S, U, W, X TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

B, D, J, L, M, N, O, P, T, U 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.56 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.186
  • Space Group: P 31 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 210.95 α = 90.00
b = 210.95 β = 90.00
c = 323.00 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-13
  • Released Date: 2013-01-16
  • Deposition author(s): Bertini, I., Lalli, D., Mangani, S., Pozzi, C., Rosa, C., Turano, P.

Revision History

  • 2013-07-24
    Type: Citation | Details: Citation update