4BGZ

Crystal Structure of H5 (tyTy) Influenza Virus Haemagglutinin

Structural Biology Knowledgebase: 4BGZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.68 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.214

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4BGZ

Classification: VIRAL PROTEIN

Total Structure Weight: 169580.31

Macromolecule Entities
Molecule Chains Length Organism Details
HEMAGGLUTININ A, C, E 327 Influenza a virus Fragment: HA1 TRYPSIN RELEASED ECTODOMAIN, RESIDUES 17-338
Gene Name(s): HA
HAEMAGGLUTININ HA1 B, D, F 166 Influenza a virus Fragment: HA2 TRYPSIN RELEASED ECTODOMAIN, RESIDUES 347-512
Gene Name(s): HA

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, C, E N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A, E, F PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.68 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.214
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 70.48 α = 90.00
b = 228.49 β = 113.88
c = 71.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-29
  • Released Date: 2013-04-24
  • Deposition author(s): Xiong, X., Coombs, P., Martin, S.R., Liu, J., Xiao, H., McCauley, J.W., Locher, K., Walker, P.A., Collins, P.J., Kawaoka, Y., Skehel, J.J., Gamblin, S.J.

Revision History

  • 2013-05-22
    Type: Citation | Details: JRNL
  • 2013-05-15
    Type: Citation | Details: JRNL
  • 2013-05-08
    Type: Citation | Details: JRNL