4BGW

Crystal Structure of H5 (VN1194) Influenza Haemagglutinin

Structural Biology Knowledgebase: 4BGW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.48 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.208

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4BGW

Classification: VIRAL PROTEIN

Total Structure Weight: 57357.52

Macromolecule Entities
Molecule Chains Length Organism Details
HEMAGGLUTININ A 326 Influenza a virus Fragment: HA1 OF TRYPSIN RELEASED ECTODOMAIN, RESIDUES 17-340
Mutation: R325T
Details: POLYBASIC CLEAVAGE SITE REMOVED
HEMAGGLUTININ B 166 Influenza a virus Fragment: HA2 OF TRYPSIN RELEASED ECTODOMAIN, RESIDUES 347-512
Details: POLYBASIC CLEAVAGE SITE REMOVED. C-TERMINAL PART IS TRPYSIN CLEAVED

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EPE
Query on EPE

B 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES (Synonym)
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.48 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.208
  • Space Group: H 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 101.24 α = 90.00
b = 101.24 β = 90.00
c = 451.32 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-29
  • Released Date: 2013-04-24
  • Deposition author(s): Xiong, X., Coombs, P., Martin, S.R., Liu, J., Xiao, H., McCauley, J.W., Locher, K., Walker, P.A., Collins, P.J., Kawaoka, Y., Skehel, J.J., Gamblin, S.J.

Revision History

  • 2013-05-22
    Type: Citation | Details: JRNL
  • 2013-05-15
    Type: Citation | Details: JRNL
  • 2013-05-08
    Type: Citation | Details: JRNL
  • 2013-05-08
    Type: Refinement description | Details: REMARK 3
  • 2013-05-01
    Type: Entry title | Details: TITLE