4BET

Crystal structure of the Legionella pneumophila FIC domain-containing effector AnkX protein (inactive H229A mutant) in complex with cytidine-diphosphate-choline

Structural Biology Knowledgebase: 4BET SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.203

Literature

Macromolecules
Sequence Display for 4BET

Classification: TRANSFERASE

Total Structure Weight: 118207.40

Macromolecule Entities
Molecule Chains Length Organism Details
PHOSPHOCHOLINE TRANSFERASE ANKX A, B 512 Legionella pneumophila EC#: 2.7.1 IUBMB
Fragment: FIC AND ANKYRIN REPEATS DOMAINS, RESIDUES 2-484
Mutation: H229A, L247P
Details: INACTIVE MUTANT
Gene Name(s): ankX legA8 lpg0695
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CDC
Query on CDC

A, B [2-CYTIDYLATE-O'-PHOSPHONYLOXYL]-ETHYL-TRIMETHYL- AMMONIUM
C14 H26 N4 O11 P2
RZZPDXZPRHQOCG-OJAKKHQRSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.203
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.10 α = 90.00
b = 122.15 β = 107.32
c = 75.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-12
  • Released Date: 2013-04-24
  • Deposition author(s): Campanacci, V., Mukherjee, S., Roy, C.R., Cherfils, J.

Revision History

  • 2013-05-29
    Type: Citation | Details: JRNL