The PR2 Photocycle Intermediate of Photoactive Yellow Protein
4BBU
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Signaling Protein
    Structure Weight: 14052.86
    Molecule: PHOTOACTIVE YELLOW PROTEIN
    Polymer: 1 Type: protein Length: 125
    Chains: A
    Organism: Halorhodospira halophila
    Gene Name: pyp
    UniProtKB: Protein Feature View | Search PDB | P16113  
     
  •   Structure Validation Hide

    View the full validation report  

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Halorhodospira halophila   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1D7E   CRYSTAL STRUCTURE OF THE P65 CRYSTAL FORM OF PHOTOACTIVEYELLOW PROTEIN 
    1F98   CRYSTAL STRUCTURE OF THE PHOTOACTIVE YELLOW PROTEIN MUTANTT50V 
    1F9I   CRYSTAL STRUCTURE OF THE PHOTOACTIVE YELLOW PROTEIN MUTANTY42F 
    1GSV   CRYSTAL STRUCTURE OF THE P65 CRYSTAL FORM OF PHOTOACTIVE YELLOW PROTEIN 
    1GSW   CRYSTAL STRUCTURE OF THE P65 CRYSTAL FORM OF PHOTOACTIVE YELLOW PROTEIN G51S MUTANT 
    1GSX   CRYSTAL STRUCTURE OF THE P65 CRYSTAL FORM OF PHOTOACTIVE YELLOW PROTEIN G47S/G51S MUTANT 
    1KOU   CRYSTAL STRUCTURE OF THE PHOTOACTIVE YELLOW PROTEINRECONSTITUTED WITH CAFFEIC ACID AT 1.16 A RESOLUTION 
    1NWZ   PYP ULTRA-HIGH RESOLUTION STRUCTURE OF A BACTERIALPHOTORECEPTOR 
    1ODV   PHOTOACTIVE YELLOW PROTEIN 1-25 DELETION MUTANT 
    1OT6   CRYOTRAPPED CRYSTAL STRUCTURE OF THE E46Q MUTANT OFPHOTOACTIVE YELLOW PROTEIN UNDER CONTINUOUS ILLUMINATIONAT 110K 
    1OT9   CRYOTRAPPED STATE IN WILD TYPE PHOTOACTIVE YELLOW PROTEIN,INDUCED WITH CONTINUOUS ILLUMINATION AT 110K 
    1OTA   E46Q MUTANT OF PHOTOACTIVE YELLOW PROTEIN, P63 AT 295K 
    1OTB   WILD TYPE PHOTOACTIVE YELLOW PROTEIN, P63 AT 295K 
    1OTD   STRONG HYDROGEN BONDS IN PHOTOACTIVE YELLOW PROTEIN ANDTHEIR ROLE IN ITS PHOTOCYCLE 
    1OTE   E46Q MUTANT OF PHOTOACTIVE YELLOW PROTEIN, P65 AT 110K 
    1OTI   E46Q MUTANT OF PHOTOACTIVE YELLOW PROTEIN, P65 AT 295K 
    1S1Y   PHOTOACTIVATED CHROMOPHORE CONFORMATION IN PHOTOACTIVEYELLOW PROTEIN (E46Q MUTANT) FROM 10 MICROSECONDS TO 3MILLISECONDS 
    1S1Z   PHOTOACTIVATED CHROMOPHORE CONFORMATION IN PHOTOACTIVEYELLOW PROTEIN (E46Q MUTANT) FROM 10 TO 500 NANOSECONDS 
    1S4R   STRUCTURE OF A REACTION INTERMEDIATE IN THE PHOTOCYCLE OFPYP EXTRACTED BY A SVD-DRIVEN ANALYSIS 
    1S4S   REACTION INTERMEDIATE IN THE PHOTOCYCLE OF PYP, INTERMEDIATE OCCUPIED BETWEEN 100 MICRO-SECONDS TO 5 MILLI-SECONDS 
    1T18   EARLY INTERMEDIATE IE1 FROM TIME-RESOLVED CRYSTALLOGRAPHYOF THE E46Q MUTANT OF PYP 
    1T19   EARLY INTERMEDIATE IE2 FROM TIME-RESOLVED CRYSTALLOGRAPHYOF THE E46Q MUTANT OF PYP 
    1T1A   LATE INTERMEDIATE IL1 FROM TIME-RESOLVED CRYSTALLOGRAPHY OFTHE E46Q MUTANT OF PYP 
    1T1B   LATE INTERMEDIATE IL2 FROM TIME-RESOLVED CRYSTALLOGRAPHY OFTHE E46Q MUTANT OF PYP 
    1T1C   LATE INTERMEDIATE IL3 FROM TIME-RESOLVED CRYSTALLOGRAPHY OFTHE E46Q MUTANT OF PYP 
    1TS0   STRUCTURE OF THE PB1 INTERMEDIATE FROM TIME-RESOLVED LAUECRYSTALLOGRAPHY 
    1TS6   STRUCTURE OF THE PB2 INTERMEDIATE FROM TIME-RESOLVED LAUECRYSTALLOGRAPHY 
    1TS7   STRUCTURE OF THE PR CIS WOBBLE AND PR E46Q INTERMEDIATESFROM TIME-RESOLVED LAUE CRYSTALLOGRAPHY 
    1TS8   STRUCTURE OF THE PR CIS PLANAR INTERMEDIATE FROM TIME -RESOLVED LAUE CRYSTALLOGRAPHY 
    1UGU   CRYSTAL STRUCTURE OF PYP E46Q MUTANT 
    1UWN   THE INITIAL EVENTS IN THE PHOTOCYCLE OF PHOTOACTIVE YELLOW PROTEIN: A COMMON MECHANISM ON LIGHT ACTIVATION IN PHOTORECEPTOR PROTEINS 
    1UWP   INITIAL EVENTS IN THE PHOTOCYCLE OF PHOTOACTIVE YELLOW PROTEIN 
    1XFN   NMR STRUCTURE OF THE GROUND STATE OF THE PHOTOACTIVE YELLOWPROTEIN LACKING THE N-TERMINAL PART 
    1XFQ   STRUCTURE OF THE BLUE SHIFTED INTERMEDIATE STATE OF THEPHOTOACTIVE YELLOW PROTEIN LACKING THE N-TERMINAL PART 
    2D01   WILD TYPE PHOTOACTIVE YELLOW PROTEIN, P65 FORM 
    2D02   R52Q MUTANT OF PHOTOACTIVE YELLOW PROTEIN, P65 FORM 
    2PHY   PHOTOACTIVE YELLOW PROTEIN, DARK STATE (UNBLEACHED) 2PHY 3 
    2PYP   PHOTOACTIVE YELLOW PROTEIN, PHOTOSTATIONARY STATE, 50% GROUND STATE, 50% BLEACHED 
    2PYR   PHOTOACTIVE YELLOW PROTEIN, 1 NANOSECOND INTERMEDIATE (287K) 
    3PHY   PHOTOACTIVE YELLOW PROTEIN, DARK STATE (UNBLEACHED), SOLUTION STRUCTURE, NMR, 26 STRUCTURES 
    3PYP   PHOTOACTIVE YELLOW PROTEIN, CRYOTRAPPED EARLY LIGHT CYCLEINTERMEDIATE 
    4B9O   THE PR0 PHOTOCYCLE INTERMEDIATE OF PHOTOACTIVE YELLOW PROTEIN 
    4BBT   THE PR1 PHOTOCYCLE INTERMEDIATE OF PHOTOACTIVE YELLOW PROTEIN 
    4BBV   THE PB0 PHOTOCYCLE INTERMEDIATE OF PHOTOACTIVE YELLOW PROTEIN 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    HC4
    Search 
    Download 
    HC4 C9 H8 O3
    4'-HYDROXYCINNAMIC ACID
    HC4:4BBU
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers: