prototype foamy virus strand transfer complexes on product DNA
DOI:10.2210/pdb4bac/pdb   NDB ID: NA2050
4BAC
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 112141.94
    Molecule: INTEGRASE
    Polymer: 1 Type: protein Length: 396
    Chains: A, B
    EC#: 2.7.7.49    2.7.7.7    3.1.26.13   
    Organism: Human spumaretrovirus
    Gene Name: pol
    UniProtKB: Search PDB | P14350   Protein Feature View
    Molecule: 5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP *TP*TP*GP*TP*AP)-3'
    Polymer: 2 Type: dna Length: 19
    Chains: C
    Organism: synthetic construct
    Molecule: DNA (38-MER)
    Polymer: 3 Type: dna Length: 38
    Chains: D
    Organism: synthetic construct
    Molecule: 5'-D(*AP*GP*GP*AP*GP*CP*CP*AP*AP*GP*AP*CP*GP*GP *AP*TP*CP)-3'
    Polymer: 4 Type: dna Length: 17
    Chains: E
    Organism: synthetic construct
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Human spumaretrovirus   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 4
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    2X6N   HUMAN FOAMY VIRUS INTEGRASE - CATALYTIC CORE. MANGANESE- BOUND STRUCTURE. 
    2X6S   HUMAN FOAMY VIRUS INTEGRASE - CATALYTIC CORE. MAGNESIUM- BOUND STRUCTURE. 
    2X74   HUMAN FOAMY VIRUS INTEGRASE - CATALYTIC CORE. 
    2X78   HUMAN FOAMY VIRUS INTEGRASE - CATALYTIC CORE. 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MG
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    MG Mg
    MAGNESIUM ION
    ZN
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    ZN Zn
    ZINC ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA2050
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Yin, Z.,  Lapkouski, M.,  Yang, W.,  Craigie, R.

    Deposition:   2012-09-12
    Release:   2012-10-10
    Last Modified (REVDAT):   2012-12-12
     
  •   Revision History    Hide
    Mouse over text for details
    2012-12-12
    Citation
    2012-12-12
    Function and keywords
    2012-12-12
    Other
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   3.26
    R-Value: 0.187 (obs.)
    R-Free: 0.226
    Space Group: P 41 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 160.62 α = 90.00 
    b = 160.62 β = 90.00 
    c = 125.09 γ = 90.00