4B08

Yeast DNA polymerase alpha, Selenomethionine protein

Structural Biology Knowledgebase: 4B08 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.67 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.195

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4B08

Classification: TRANSFERASE

Total Structure Weight: 104845.59

Macromolecule Entities
Molecule Chains Length Organism Details
DNA POLYMERASE ALPHA CATALYTIC SUBUNIT A A 910 Saccharomyces cerevisiae EC#: 2.7.7.7 IUBMB
Fragment: POLYMERASE DOMAIN, RESIDUES 349-1258
Details: SELENOMETHIONINE PROTEIN
Gene Name(s): POL1 CDC17 YNL102W N2181
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.67 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.195
  • Space Group: P 2 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 73.97 α = 90.00
b = 127.45 β = 90.00
c = 144.08 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-06-29
  • Released Date: 2013-02-27
  • Deposition author(s): Perera, R.L., Torella, R., Klinge, S., Kilkenny, M.L., Maman, J.D., Pellegrini, L.

Revision History

  • 2013-05-01
    Type: Citation | Details: JRNL
  • 2013-04-17
    Type: Citation | Details: JRNL