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pVHL:EloB:EloC complex, in complex with capped Hydroxyproline
4AWJ
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription
    Structure Weight: 168754.46
    Molecule: TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2
    Polymer: 1 Type: protein Length: 104
    Chains: A, D, G, J
    Fragment: RESIDUES 1-104
    Organism: Homo sapiens
    Gene Name: Gene View for TCEB2
    UniProtKB: Protein Feature View | Search PDB | Q15370  
    Molecule: TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1
    Polymer: 2 Type: protein Length: 97
    Chains: B, E, H, K
    Fragment: RESIDUES 17-112
    Details: EXTRA M AT N-TERMINUS AS RESULT OF CLONING
    Organism: Homo sapiens
    Gene Name: Gene View for TCEB1
    UniProtKB: Protein Feature View | Search PDB | Q15369  
    Molecule: VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR
    Polymer: 3 Type: protein Length: 163
    Chains: C, F, I, L
    Fragment: RESIDUES 54-213
    Organism: Homo sapiens
    Gene Name: Gene View for VHL
    UniProtKB: Protein Feature View | Search PDB | P40337  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1LM8  STRUCTURE OF A HIF-1A-PVHL-ELONGINB-ELONGINC COMPLEX 
    1LQB  CRYSTAL STRUCTURE OF A HYDROXYLATED HIF-1 ALPHA PEPTIDEBOUND TO THE PVHL/ELONGIN-C/ELONGIN-B COMPLEX 
    1VCB  THE VHL-ELONGINC-ELONGINB STRUCTURE 
    2C9W  CRYSTAL STRUCTURE OF SOCS-2 IN COMPLEX WITH ELONGIN- B AND ELONGIN-C AT 1.9A RESOLUTION 
    2IZV  CRYSTAL STRUCTURE OF SOCS-4 IN COMPLEX WITH ELONGIN- B AND ELONGIN-C AT 2.55A RESOLUTION 
    2XAI  CRYSTAL STRUCTURE OF ANKYRIN REPEAT AND SOCS BOX- CONTAINING PROTEIN 9 (ASB9) IN COMPLEX WITH ELONGINB AND ELONGINC 
    3ZRC  PVHL54-213-ELOB-ELOC COMPLEX (4R)-4-HYDROXY-1-[(3- METHYLISOXAZOL-5-YL)ACETYL]-N-[4-(1,3-OXAZOL-5-YL )BENZYL]-L-PROLINAMIDE BOUND 
    3ZRF  PVHL54-213-ELOB-ELOC COMPLEX_APO 
    3ZTC  PVHL54-213-ELOB-ELOC COMPLEX _ (2S,4R)-N-((1,1'- BIPHENYL)-4-YLMETHYL)-4-HYDROXY-1-(2-(3-METHYLISOXAZOL -5-YL)ACETYL)PYRROLIDINE-2-CARBOXAMIDE 
    3ZTD  PVHL54-213-ELOB-ELOC COMPLEX _ METHYL 4-(((2S,4R)- 4-HYDROXY-1-(2-(3-METHYLISOXAZOL-5-YL)ACETYL) PYRROLIDINE-2-CARBOXAMIDO)METHYL)BENZOATE 
    3ZUN  PVHL54-213-ELOB-ELOC COMPLEX_(2S,4R)-4-HYDROXY-1-( 2-(3-METHYLISOXAZOL-5-YL)ACETYL)-N-(4-NITROBENZYL) PYRROLIDINE-2-CARBOXAMIDE BOUND 
    4AJY  VON HIPPEL-LINDAU PROTEIN-ELONGINB-ELONGINC COMPLEX, BOUND TO HIF1-ALPHA PEPTIDE 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ACT
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    ACT C2 H3 O2
    ACETATE ION
    ACY
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    ACY C2 H4 O2
    ACETIC ACID
    GOL
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    GOL C3 H8 O3
    GLYCEROL
    V6F
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    V6F C8 H14 N2 O3
    (4R)-1-acetyl-4-hydroxy-N-methyl-L-prolinamide
    V6F:4AWJ
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    V6F
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    V6F
    N/Ain BindingDB
    Kd: 10000000 nM - data from BindingMOAD  
    Kd: 10000000 nM - data from PDBbind  
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    CAS
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    CAS C5 H12 As N O2 S CYS lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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