4AJY

von Hippel-Lindau protein-ElonginB-ElonginC complex, bound to Hif1- alpha peptide

Structural Biology Knowledgebase: 4AJY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.190

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4AJY

Classification: TRANSCRIPTION

Total Structure Weight: 45315.77

Macromolecule Entities
Molecule Chains Length Organism Details
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2 B 118 Homo sapiens Gene Name(s): TCEB2 Gene View
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1 C 97 Homo sapiens Fragment: 17-112
Details: EXTRA MET AT N-TERMINUS DUE TO CLONING
Gene Name(s): TCEB1 Gene View
HYPOXIA-INDUCIBLE FACTOR 1-ALPHA H 19 Homo sapiens Fragment: RESIDUES 559-577
Mutation: L559D, M561A
Gene Name(s): HIF1A Gene View BHLHE78 MOP1 PASD8
VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR V 163 Homo sapiens Fragment: RESIDUES 54-213
Gene Name(s): VHL Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

V GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
HYP
Query on HYP
H L-PEPTIDE LINKING C5 H9 N O3 PRO

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.190
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 59.23 α = 90.00
b = 59.23 β = 90.00
c = 244.04 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-21
  • Released Date: 2012-11-14
  • Deposition author(s): Van Molle, I., Thomann, A., Buckley, D.L., So, E.C., Lang, S., Crews, C.M., Ciulli, A.

Revision History

No revisions since initial release