Crystal Structure of Fucose binding lectin from Aspergillus Fumigatus (AFL) in complex with seleno fucoside.
4AGI
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Sugar Binding Protein
    Structure Weight: 145220.97
    Molecule: FUCOSE-SPECIFIC LECTIN FLEA
    Polymer: 1 Type: protein Length: 315
    Chains: A, B, C, D
    Mutation: YES
    Organism: Aspergillus fumigatus
    Gene Name: AFUA_5G14740
    UniProtKB: Protein Feature View | Search PDB | Q4WW81  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Aspergillus fumigatus   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    4AGT   CRYSTAL STRUCTURE OF FUCOSE BINDING LECTIN FROM ASPERGILLUS FUMIGATUS (AFL) IN COMPLEX WITH FUC1-6GLCNAC . 
    4AH4   CRYSTAL STRUCTURE OF FUCOSE BINDING LECTIN FROM ASPERGILLUS FUMIGATUS (AFL) IN COMPLEX WITH BGA OLIGOSACCHARIDE. 
    4AH5   CRYSTAL STRUCTURE OF FUCOSE BINDING LECTIN FROM ASPERGILLUS FUMIGATUS (AFL) IN COMPLEX WITH LEWISY TETRASACCHARIDE. 
    4AHA   CRYSTAL STRUCTURE OF FUCOSE BINDING LECTIN FROM ASPERGILLUS FUMIGATUS (AFL) IN COMPLEX WITH FUCOSYLATED MONOSACCHARIDES (FUC1-2GAL, FUC1-3GLCNAC, FUC1-4GLCNAC AND FUC1-6GLCNAC) 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    SFU
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    SFU C7 H14 O4 Se
    METHYL 6-DEOXY-1-SELENO-ALPHA-L-GALACTOPYRANOSIDE
    SFU:4AGI
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    CSK
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    CSK C4 H9 N O2 S Se lPeptideLinking
    CSD
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    CSD C3 H7 N O4 S CYS lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Houser, J.,  Komarek, J.,  Kostlanova, N.,  Lahmann, M.,  Cioci, G.,  Varrot, A.,  Imberty, A.,  Wimmerova, M.

    Deposition:   2012-01-30
    Release:   2013-02-06
    Last Modified (REVDAT):   2014-11-05
     
  •   Revision History    Hide
    Mouse over text for details
    2014-11-05
    Binding sites and description
    2014-11-05
    Citation
    2014-11-05
    Polymer description
    2014-11-05
    Non-polymer description
    2014-11-05
    Refinement description
    2014-11-05
    Other
    2014-11-05
    Atom nomenclature
    2014-11-05
    Linkage
    2014-01-08
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.60
    R-Value: 0.154 (obs.)
    R-Free: 0.185
    Space Group: P 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 46.69 α = 91.09 
    b = 79.85 β = 88.89 
    c = 84.39 γ = 103.00