4AFX

Crystal structure of the reactive loop cleaved ZPI in I2 space group

Structural Biology Knowledgebase: 4AFX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.210

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4AFX

Classification: HYDROLASE INHIBITOR

Total Structure Weight: 48896.44

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN Z DEPENDENT PROTEASE INHIBITOR A 387 Homo sapiens Fragment: RESIDUES 23-408
Mutation: Y387R
Details: REACTIVE LOOP CLEAVED ZPI
Gene Name(s): SERPINA10 Gene View ZPI UNQ707/PRO1358
PROTEIN Z DEPENDENT PROTEASE INHIBITOR B 36 Homo sapiens Fragment: RESIDUES 409-444
Mutation: V395I
Details: REACTIVE LOOP CLEAVED ZPI
Gene Name(s): SERPINA10 Gene View ZPI UNQ707/PRO1358

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.210
  • Space Group: I 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 78.85 α = 90.00
b = 106.66 β = 112.58
c = 81.16 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-23
  • Released Date: 2013-01-09
  • Deposition author(s): Zhou, A., Yan, Y., Wei, Z.

Revision History

No revisions since initial release