4A72

Crystal structure of the omega transaminase from Chromobacterium violaceum in a mixture of apo and PLP-bound states

Structural Biology Knowledgebase: 4A72 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.173

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4A72

Classification: TRANSFERASE

Total Structure Weight: 205613.49

Macromolecule Entities
Molecule Chains Length Organism Details
OMEGA TRANSAMINASE A, B, C, D 459 Chromobacterium violaceum EC#: 2.6.1.18 IUBMB
Gene Name(s): CV_2025

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLP
Query on PLP

C, D PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.173
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 61.35 α = 105.27
b = 62.12 β = 90.66
c = 119.24 γ = 104.43

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-10
  • Released Date: 2012-01-25
  • Deposition author(s): Logan, D.T., Hakansson, M., Yengo, K., Svedendahl Humble, M., Engelmark Cassimjee, K., Walse, B., Abedi, V., Federsel, H.-J., Berglund, P.

Revision History

  • 2012-08-01
    Type: Citation | Details: JRNL