3ZRC

pVHL54-213-EloB-EloC complex (4R)-4-HYDROXY-1-[(3-METHYLISOXAZOL-5-YL)ACETYL]-N-[4-(1,3-OXAZOL-5-YL)BENZYL]-L-PROLINAMIDE bound

Structural Biology Knowledgebase: 3ZRC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.350
  • R-Value Work: 0.242

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ZRC

Classification: TRANSCRIPTION

Total Structure Weight: 173494.52

Macromolecule Entities
Molecule Chains Length Organism Details
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2 A, D, G, J 118 Homo sapiens Gene Name(s): TCEB2 Gene View
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1 B, E, H, K 97 Homo sapiens Fragment: 17-112
Gene Name(s): TCEB1 Gene View
VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR C, F, I, L 163 Homo sapiens Fragment: RESIDUES 54-213
Gene Name(s): VHL Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
L8B
Query on L8B

C, F, I, L (4R)-4-HYDROXY-1-[(3-METHYLISOXAZOL-5-YL)ACETYL]- N-[4-(1,3-OXAZOL-5-YL)BENZYL]-L-PROLINAMIDE
C21 H22 N4 O5
HFCLIEBJTGJKSV-AEFFLSMTSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
L8B N/A in BindingDB
N/A in BindingMoad
Kd: 5400 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.350
  • R-Value Work: 0.242
  • Space Group: P 41 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 93.74 α = 90.00
b = 93.74 β = 90.00
c = 363.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-06-15
  • Released Date: 2012-03-07
  • Deposition author(s): Van Molle, I., Buckley, D.L., Crews, C.M., Ciulli, A.

Revision History

  • 2012-03-28
    Type: Other | Details: Citation