3ZIU

Crystal structure of Mycoplasma mobile Leucyl-tRNA Synthetase with Leu-AMS in the active site

Structural Biology Knowledgebase: 3ZIU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.07 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.160

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ZIU

Classification: LIGASE

Total Structure Weight: 152091.81

Macromolecule Entities
Molecule Chains Length Organism Details
LEUCYL-TRNA SYNTHETASE A, B 637 Mycoplasma mobile EC#: 6.1.1.4 IUBMB
Details: 5-O-N-LEUCYL-SULFAMOYLADENOSINE, LEUCYL ADENYLATE ANALOGUE (LEUAMS) BOUND TO THE ACTIVE SITE
Gene Name(s): leuS MMOB5390
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LSS
Query on LSS

A, B 5'-O-(L-leucylsulfamoyl)adenosine
5-O-N-LEUCYL-SULFAMOYLADENOSINE (Synonym)
C16 H25 N7 O7 S
XFEDFDTWJLGMBO-LEJQEAHTSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.07 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.160
  • Space Group: H 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 202.85 α = 90.00
b = 202.85 β = 90.00
c = 213.92 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-10
  • Released Date: 2013-02-27
  • Deposition author(s): Li, L., Palencia, A., Lukk, T., Li, Z., Luthey-Schulten, Z.A., Cusack, S., Martinis, S.A., Boniecki, M.T.

Revision History

  • 2013-03-20
    Type: Citation | Details: JRNL