3ZGN

Crystal structures of Escherichia coli IspH in complex with TMBPP a potent inhibitor of the methylerythritol phosphate pathway

Structural Biology Knowledgebase: 3ZGN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 3ZGN

Classification: OXIDOREDUCTASE

Total Structure Weight: 74539.24

Macromolecule Entities
Molecule Chains Length Organism Details
4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE A, B 332 Escherichia coli EC#: 1.17.7.4 IUBMB
Gene Name(s): ispH lytB yaaE b0029 JW0027
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SF4
Query on SF4

A, B IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
10G
Query on 10G

A, B (2E)-3-methyl-4-sulfanylbut-2-en-1-yl trihydrogen diphosphate
C5 H12 O7 P2 S
YSUKJHNOIKPIFM-GORDUTHDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.205
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 112.39 α = 90.00
b = 80.57 β = 94.46
c = 70.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-12-18
  • Released Date: 2013-01-09
  • Deposition author(s): Borel, F., Barbier, E., Kratsutsky, S., Janthawornpong, K., Rohmer, M., Dale Poulter, C., Ferrer, J.L., Seemann, M.

Revision History

No revisions since initial release