3ZF2

Phage dUTPases control transfer of virulence genes by a proto- oncogenic G protein-like mechanism. (Staphylococcus bacteriophage 80alpha dUTPase).

Structural Biology Knowledgebase: 3ZF2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.212

Literature

Macromolecules
Sequence Display for 3ZF2

Classification: HYDROLASE

Total Structure Weight: 23029.49

Macromolecule Entities
Molecule Chains Length Organism Details
DUTPASE A 204 Staphylococcus phage 80alpha EC#: 3.6.1.23 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TRS
Query on TRS

A 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NI
Query on NI

A NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.212
  • Space Group: P 21 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 87.37 α = 90.00
b = 87.37 β = 90.00
c = 87.37 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-12-10
  • Released Date: 2013-01-30
  • Deposition author(s): Tormo-Mas, M.A., Donderis, J., Garcia-Caballer, M., Alt, A., Mir-Sanchis, I., Marina, A., Penades, J.R.

Revision History

  • 2013-04-17
    Type: Other | Details: REMARK 465
  • 2013-04-17
    Type: Polymer description | Details: SEQRES
  • 2013-04-17
    Type: Sequence database correspondence | Details: SEQADV
  • 2013-04-03
    Type: Refinement description | Details: REMARK 3
  • 2013-04-03
    Type: Entry title | Details: TITLE
  • 2013-04-03
    Type: Other | Details: REMARK 900
  • 2013-03-20
    Type: Citation | Details: JRNL