3W31

Structual basis for the recognition of Ubc13 by the Shigella flexneri effector OspI

Structural Biology Knowledgebase: 3W31 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.96 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.245

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3W31

Classification: IMMUNE SYSTEM

Total Structure Weight: 42066.82

Macromolecule Entities
Molecule Chains Length Organism Details
ORF169b A 220 Shigella flexneri Mutation: C62A
Gene Name(s): ORF169b SF_p0209
Ubiquitin-conjugating enzyme E2 N B 155 Homo sapiens EC#: 2.3.2.23 IUBMB
Gene Name(s): UBE2N Gene View BLU

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IOD
Query on IOD

A, B IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.96 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.245
  • Space Group: P 3 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 119.24 α = 90.00
b = 119.24 β = 90.00
c = 69.99 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-12-07
  • Released Date: 2013-03-27
  • Deposition author(s): Nishide, A., Kim, M., Takagi, K., Sasakawa, C., Mizushima, T.

Revision History

  • 2013-07-17
    Type: Citation | Details: Citation update