3W2R

EGFR Kinase domain T790M/L858R mutant with compound 4

Structural Biology Knowledgebase: 3W2R SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.217

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3W2R

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 38648.44

Macromolecule Entities
Molecule Chains Length Organism Details
Epidermal growth factor receptor A 331 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: Kinase domain, UNP residues 698-1022
Mutation: T790M, L858R
Gene Name(s): EGFR Gene View ERBB ERBB1 HER1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
W2R
Query on W2R

A 1-{3-[2-chloro-4-({5-[2-(2-hydroxyethoxy)ethyl]- 5H-pyrrolo[3,2-d]pyrimidin-4-yl}amino)phenoxy]phenyl}- 3-cyclohexylurea
C29 H33 Cl N6 O4
WDGCQQKABPWBPZ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
W2R IC50: 6.9 nM (99) BindingDB

N/A in BindingMoad
IC50: 19 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.217
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 61.16 α = 90.00
b = 61.16 β = 90.00
c = 169.72 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-12-03
  • Released Date: 2013-01-16
  • Deposition author(s): Sogabe, S., Kawakita, Y., Igaki, S.

Revision History

  • 2013-08-21
    Type: Citation | Details: Citation update