3W0T

Human Glyoxalase I with an N-hydroxypyridone derivative inhibitor

Structural Biology Knowledgebase: 3W0T SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.175

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3W0T

Classification: LYASE / LYASE INHIBITOR

Total Structure Weight: 86746.40

Macromolecule Entities
Molecule Chains Length Organism Details
Lactoylglutathione lyase A, B, C, D 187 Homo sapiens EC#: 4.4.1.5 IUBMB
Gene Name(s): GLO1 Gene View

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EPE
Query on EPE

B, D 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES (Synonym)
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
HPU
Query on HPU

A, B, C, D N-[3-(1-hydroxy-6-oxo-4-phenyl-1,6-dihydropyridin- 2-yl)phenyl]methanesulfonamide
C18 H16 N2 O4 S
MDYXMYBWSBAIMZ-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
ZN
Query on ZN

A, B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.175
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.57 α = 90.00
b = 81.03 β = 90.13
c = 68.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-02
  • Released Date: 2013-11-06
  • Deposition author(s): Fukami, T.A., Irie, M., Matsuura, T.

Revision History

No revisions since initial release