3W0F

Crystal structure of mouse Endonuclease VIII-LIKE 3 (mNEIL3)

Structural Biology Knowledgebase: 3W0F SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.197

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3W0F

Classification: HYDROLASE

Total Structure Weight: 32421.09

Macromolecule Entities
Molecule Chains Length Organism Details
Endonuclease 8-like 3 A 287 Mus musculus EC#: 3.2.2 IUBMB
Fragment: glycosylase domain, UNP residues 2-282
Gene Name(s): Neil3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IOD
Query on IOD

A IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.197
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 115.58 α = 90.00
b = 43.82 β = 128.96
c = 77.64 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-30
  • Released Date: 2013-01-16
  • Deposition author(s): Liu, M., Imamura, K., Averill, A.M., Wallace, S.S., Doublie, S.

Revision History

  • 2013-02-27
    Type: Citation | Details: Citation update