3VUH

Crystal structure of a cysteine-deficient mutant M3 in MAP kinase JNK1

Structural Biology Knowledgebase: 3VUH SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.194

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VUH

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 44571.52

Macromolecule Entities
Molecule Chains Length Organism Details
Mitogen-activated protein kinase 8 A 370 Homo sapiens EC#: 2.7.11.24 IUBMB
Fragment: kinase domain, UNP residues 1-364
Mutation: C116S, C163A, C245S
Gene Name(s): MAPK8 Gene View JNK1 PRKM8 SAPK1 SAPK1C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Peptide from C-Jun-amino-terminal kinase-interacting protein 1 F 11 Homo sapiens Gene Name(s): MAPK8IP1 Gene View IB1 JIP1 PRKM8IP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.194
  • Space Group: I 4 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 169.93 α = 90.00
b = 169.93 β = 90.00
c = 87.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-06-28
  • Released Date: 2013-02-13
  • Deposition author(s): Nakaniwa, T., Kinoshita, T., Inoue, T.

Revision History

No revisions since initial release