3VTN

The crystal structure of the C-terminal domain of Mu phage central spike - Pt derivative for MAD

Structural Biology Knowledgebase: 3VTN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.304
  • R-Value Work: 0.273

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VTN

Classification: METAL BINDING PROTEIN

Total Structure Weight: 11163.14

Macromolecule Entities
Molecule Chains Length Organism Details
Protein gp45 A 101 Enterobacteria phage mu Fragment: UNP residues 100-197
Gene Name(s): Mup45

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PT
Query on PT

A PLATINUM (II) ION
Pt
HRGDZIGMBDGFTC-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

A FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.304
  • R-Value Work: 0.273
  • Space Group: P 3 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 47.17 α = 90.00
b = 47.17 β = 90.00
c = 72.11 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-06-01
  • Released Date: 2013-02-06
  • Deposition author(s): Harada, K., Yamashita, E., Nakagawa, A., Takeda, S.

Revision History

No revisions since initial release