Crystal structures of rat VDR-LBD with W282R mutation
3VT9
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  •   Molecular Description Hide
    Classification: Hormone Receptor
    Structure Weight: 32623.83
    Molecule: Vitamin D3 receptor
    Polymer: 1 Type: protein Length: 271
    Chains: A
    Fragment: UNP RESIDUES 116-423
    Mutation: W282R
    Organism: Rattus norvegicus
    Gene Names: Vdr Nr1i1
    UniProtKB: Protein Feature View | Search PDB | P13053  
    Molecule: COACTIVATOR PEPTIDE DRIP
    Polymer: 2 Type: protein Length: 13
    Chains: C
     
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  •   Source Hide
    Polymer: 1
    Scientific Name: Rattus norvegicus   Taxonomy   Common Name: Rats Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    2ZLC    
    3VT3    
    3VT4    
    3VT5    
    3VT6    
    3VT7    
    3VT8    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    YI4
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    YI4 C31 H50 O4
    (1R,2Z,3R,5E,7E,9beta,17beta)-2-(2-hydroxyethylidene)- 17-[(2R)-6-hydroxy-6-methylheptan-2-yl]-9- (prop-2-en-1-yl)-9,10-secoestra-5,7-diene- 1,3-diol
    YI4:3VT9
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Nakabayashi, M.,  Shimizu, M.,  Ikura, T.,  Ito, N.

    Deposition:   2012-05-19
    Release:   2013-05-22
    Last Modified (REVDAT):   2014-02-12
     
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    2014-02-12
    Citation
    2013-09-11
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.35
    R-Value: 0.198 (obs.)
    R-Free: 0.250
    Space Group: C 1 2 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 154.71 α = 90.00 
    b = 42.05 β = 95.63 
    c = 41.97 γ = 90.00