3VSH

Crystal structure of native 1,6-APD (with Iron), 2-Animophenol-1,6-Dioxygenase

Structural Biology Knowledgebase: 3VSH SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.175

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VSH

Classification: OXIDOREDUCTASE

Total Structure Weight: 128875.17

Macromolecule Entities
Molecule Chains Length Organism Details
2-amino-5-chlorophenol 1,6-dioxygenase alpha subunit A, C 271 Comamonas testosteroni EC#: 1.13.11.8 IUBMB
Gene Name(s): cnbCa amnA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
2-amino-5-chlorophenol 1,6-dioxygenase beta subunit B, D 312 Comamonas testosteroni EC#: 1.13.11.74 IUBMB
Gene Name(s): cnbCb amnB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FE2
Query on FE2

B, D FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.175
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 265.39 α = 90.00
b = 47.47 β = 109.47
c = 107.38 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-04-25
  • Released Date: 2013-01-16
  • Deposition author(s): Li, D.F., Hou, Y.J., Hu, Y., Wang, D.C., Liu, W.

Revision History

No revisions since initial release