3VR2

Crystal structure of nucleotide-free A3B3 complex from Enterococcus hirae V-ATPase [eA3B3]

Structural Biology Knowledgebase: 3VR2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.198

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VR2

Classification: HYDROLASE

Total Structure Weight: 359697.00

Macromolecule Entities
Molecule Chains Length Organism Details
V-type sodium ATPase catalytic subunit A A, B, C 600 Enterococcus hirae EC#: 3.6.3.15 IUBMB
Gene Name(s): ntpA EHR_08260
V-type sodium ATPase subunit B D, E, F 465 Enterococcus hirae EC#: 3.6.3.15 IUBMB
Gene Name(s): ntpB EHR_08265

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: Bacterial V-type ATPase

Protein Name: Rotor of V-type Na+-ATPase


Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D, E, F L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.198
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 121.80 α = 90.00
b = 121.50 β = 90.06
c = 128.26 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-04-03
  • Released Date: 2013-01-16
  • Deposition author(s): Arai, S., Saijo, S., Suzuki, K., Mizutani, K., Kakinuma, Y., Ishizuka-Katsura, Y., Ohsawa, N., Terada, T., Shirouzu, M., Yokoyama, S., Iwata, S., Yamato, I., Murata, T.

Revision History

  • 2013-02-06
    Type: Citation | Details: Citation update