3VQG

Crystal Structure Analysis of the PDZ Domain Derived from the Tight Junction Regulating Protein

Structural Biology Knowledgebase: 3VQG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.170

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VQG

Classification: PEPTIDE BINDING PROTEIN

Total Structure Weight: 11576.04

Macromolecule Entities
Molecule Chains Length Organism Details
E3 ubiquitin-protein ligase LNX A 94 Mus musculus EC#: 6.3.2 IUBMB
Fragment: second PDZ domain
Gene Name(s): Lnx1 Lnx
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
C-terminal peptide from Immunoglobulin superfamily member 5 B 9 Mus musculus Gene Name(s): Igsf5 Jam4
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.170
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 60.85 α = 90.00
b = 50.77 β = 120.08
c = 33.14 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-23
  • Released Date: 2013-03-27
  • Deposition author(s): Akiyoshi, Y., Hamada, D., Goda, N., Tenno, T., Narita, H., Nakagawa, A., Furuse, M., Suzuki, M., Hiroaki, H.

Revision History

No revisions since initial release