3VNS

Co-crystal structure of NRPS adenylation protein CytC1 with D-valine and AMP from streptomyces

Structural Biology Knowledgebase: 3VNS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.191

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VNS

Classification: LIGASE

Total Structure Weight: 59457.57

Macromolecule Entities
Molecule Chains Length Organism Details
NRPS adenylation protein CytC1 A 544 Streptomyces sp.

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AMP
Query on AMP

A ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DVA
Query on DVA

A D-VALINE
C5 H11 N O2
KZSNJWFQEVHDMF-SCSAIBSYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.191
  • Space Group: I 2 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 156.54 α = 90.00
b = 156.54 β = 90.00
c = 156.54 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-17
  • Released Date: 2013-01-23
  • Deposition author(s): Okumura, H., Ueki, M., Shiro, Y., Osada, H.

Revision History

No revisions since initial release