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Crystal structure of GFP-Wrnip1 UBZ domain fusion protein in complex with ubiquitin
3VHT
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Fluorescent Protein/protein Binding
    Structure Weight: 65492.89
    Molecule: Green fluorescent protein
    Polymer: 1 Type: protein Length: 235
    Chains: A
    Fragment: GFP domain
    Organism: Aequorea victoria
    Gene Name: GFP
    UniProtKB: Protein Feature View | Search PDB | P42212  
    Molecule: Green fluorescent protein, ATPase WRNIP1
    Polymer: 2 Type: protein Length: 273
    Chains: B
    EC#: 3.6.1.3   
    Fragment: GFP-Wrnip1 UBZ domain
    Details: THE FUSION PROTEIN OF YEAST ENHANCED GREEN FLUORESCENT PROTEIN, LINKER (GLY-SER) AND HUMAN WRNIP1 UBZ
    Organism: Aequorea victoria Homo sapiens
    Gene Names: Gene View for WRNIP1 WHIP
    UniProtKB: Protein Feature View | Search PDB | Q96S55  
    Molecule: Ubiquitin
    Polymer: 3 Type: protein Length: 76
    Chains: C
    Organism: Mus musculus
    Gene Name: Uba52
    UniProtKB: Protein Feature View | Search PDB | E9Q9J0  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Aequorea victoria   Taxonomy   Common Name: Jellyfish Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Aequorea victoria, homo sapiens   Taxonomy   Common Name: Jellyfish, human Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Mus musculus   Taxonomy   Common Name: Mouse  
     
  •   Related PDB Entries Hide
    Identifier Details
    3VHS   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ZN
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    ZN Zn
    ZINC ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    CR2
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    CR2 C13 H13 N3 O4 GLY, TYR, GLY lPeptideLinking
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Suzuki, N.,  Wakatsuki, S.,  Kawasaki, M.

    Deposition:   2011-09-06
    Release:   2012-10-10
     
  •   Revision History    Hide
    No revisions since initial release
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.40
    R-Value: 0.193 (obs.)
    R-Free: 0.238
    Space Group: C 2 2 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 88.95 α = 90.00 
    b = 143.69 β = 90.00 
    c = 106.86 γ = 90.00