3VAM

Structure of U2AF65 variant with BrU5C2 DNA

Structural Biology Knowledgebase: 3VAM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.194

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VAM

Classification: RNA BINDING PROTEIN / DNA

Total Structure Weight: 44247.15


Macromolecule Entities
Molecule Chains Length Organism Details
Splicing factor U2AF 65 kDa subunit A, B 174 Homo sapiens Fragment: RNA Binding Domains 1 and 2
Gene Name(s): U2AF2 Gene View U2AF65
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*UP*CP*UP*UP*(BRU)P*UP*U)-3') E, P 7 synthetic

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CPQ
Query on CPQ

B N,N-BIS(3-D-GLUCONAMIDOPROPYL)DEOXYCHOLAMIDE
DEOXY-BIGCHAP (Synonym)
C42 H75 N3 O15
OJSUWTDDXLCUFR-HGZMBBKESA-N
Ligand Explorer
 
JSmol
DIO
Query on DIO

A, B 1,4-DIETHYLENE DIOXIDE
C4 H8 O2
RYHBNJHYFVUHQT-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
GOL
Query on GOL

A, B GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
BRU
Query on BRU
E, P DNA LINKING C9 H12 Br N2 O8 P DU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.194
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 166.11 α = 90.00
b = 37.97 β = 125.49
c = 101.97 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-12-29
  • Released Date: 2013-02-13
  • Deposition author(s): Jenkins, J.L., Kielkopf, C.L.

Revision History

  • 2013-05-22
    Type: Citation | Details: Citation update