Co-crystal structure of Wild Type Rat polymerase beta: Enzyme-DNA binary complex
DOI:10.2210/pdb3v7j/pdb   NDB ID: NA1480
3V7J
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 45465.62
    Molecule: DNA polymerase beta
    Polymer: 1 Type: protein Length: 340
    Chains: A
    EC#: 2.7.7.7    4.2.99   
    Organism: Rattus norvegicus
    Gene Name: Polb
    UniProtKB: Protein Feature View | Search PDB | P06766  
    Molecule: DNA (5'-D(P*AP*TP*GP*TP*GP*AP*GP*T)-3')
    Polymer: 2 Type: dna Length: 8
    Chains: P
    Molecule: DNA (5'-D(P*CP*AP*AP*AP*CP*TP*CP*AP*CP*AP*TP*A)-3')
    Polymer: 3 Type: dna Length: 12
    Chains: T
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Rattus norvegicus   Taxonomy   Common Name: Rat Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3V7K    
    3V7L    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CL
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    CL Cl
    CHLORIDE ION
    NA
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    NA Na
    SODIUM ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA1480
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Rangarajan, S.,  Jaeger, J.

    Deposition:   2011-12-21
    Release:   2013-01-16
     
  •   Revision History    Hide
    No revisions since initial release
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.25
    R-Value: 0.213 (obs.)
    R-Free: 0.243
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 56.78 α = 90.00 
    b = 77.11 β = 90.00 
    c = 116.65 γ = 90.00