POP-OUT | CLOSE
 
Calcium-Dependent Protein Kinase 1 from Toxoplasma gondii (TgCDPK1) in complex with inhibitor UW1288
3V5P
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/transferase Inhibitor
    Structure Weight: 55579.94
    Molecule: Calmodulin-domain protein kinase 1
    Polymer: 1 Type: protein Length: 484
    Chains: A
    EC#: 2.7.11.17   
    Fragment: UNP residues 30-507
    Organism: Toxoplasma gondii
    Gene Name: CDPK1
    UniProtKB: Protein Feature View | Search PDB | Q9BJF5  
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Toxoplasma gondii   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    3UPX   
    3UPZ   
    3UQF   
    3UQG   
    3V51   
    3V5T   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    C88
    Search 
    Download 
    C88 C19 H24 N6 O
    3-(4-methoxy-3-methylphenyl)-1-(piperidin- 4-ylmethyl)-1H-pyrazolo[3,4-d]pyrimidin-4- amine
    C88:3V5P
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    C88
    Search 
    Download 
    C88
    N/Ain BindingDB
    Ki: 11 nM - data from BindingMOAD  
    N/Ain PDBbind
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Merritt, E.A.,  Larson, E.T.

    Deposition:   2011-12-16
    Release:   2012-03-14
    Last Modified (REVDAT):   2012-04-18
     
  •   Revision History    Hide
    Mouse over text for details
    2012-04-18
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.10
    R-Value: 0.211 (obs.)
    R-Free: 0.259
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 48.16 α = 90.00 
    b = 73.51 β = 100.28 
    c = 66.77 γ = 90.00