3V3O

Crystal structure of TetX2 T280A: an adaptive mutant in complex with tigecycline

Structural Biology Knowledgebase: 3V3O SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.298
  • R-Value Work: 0.232

Literature

Macromolecules
Sequence Display for 3V3O

Classification: OXIDOREDUCTASE / ANTIBIOTIC

Total Structure Weight: 176079.53

Macromolecule Entities
Molecule Chains Length Organism Details
TetX2 protein A, B, C, D 378 Bacteroides thetaiotaomicron Mutation: E94K, E266K, T280A
Gene Name(s): tetX2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B, C, D FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
T1C
Query on T1C

A, B, C, D TIGECYCLINE
C29 H41 N5 O8
FPZLLRFZJZRHSY-HJYUBDRYSA-P
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.298
  • R-Value Work: 0.232
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 68.13 α = 111.02
b = 80.08 β = 89.97
c = 87.24 γ = 92.97

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-12-13
  • Released Date: 2013-01-30
  • Deposition author(s): Walkiewicz, K., Shamoo, Y.

Revision History

No revisions since initial release